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Parallel subgenome common carp

WebDec 1, 2024 · Common carp (Cyprinus carpio), with the characteristics of strong adaptability, excellent reproductive ability, and rich nutritional value, has been reared in Asia for more than 2 000 years... WebSep 1, 2024 · Parallel subgenome structure evolution in the allo-tetraploids was featured with equivalent chromosome components, higher protein identities, similar transposon divergence and contents, homoeologous exchanges, better synteny level, strong sequence compensation and symmetric purifying selection.

Symmetric subgenomes and balanced homoeolog expression …

WebSep 30, 2024 · In the present study, we report an improved genome assembly of allo-tetraploid common carp, an updated genome annotation of allo-tetraploid goldfish and the chromosome-scale assemblies of a progenitor-like diploid Puntius tetrazona and an outgroup diploid Paracanthobrama guichenoti. WebDec 4, 2024 · The common carp is a representative polyploidy species of the Cyprininae, which includes diploids, tetraploids, and higher polyploids. The common carp is widely … drayk bowen announcement https://thebrummiephotographer.com

Parallel subgenome structure and divergent expression evolution …

WebOct 11, 2024 · Common carp (Cyprinus carpio) is an allotetraploid species derived from recent whole genome duplication and provides a model to study polyploid genome … WebMay 27, 2024 · The ancient WGD within Cyprininae was identified via phylogenetic analyses of genome-wide markers, which integrated subgenomes M and P. Analyses compared both subgenomes of goldfish, common carp, and golden-line barbel ( Sinocyclocheilus grahami) to zebrafish and grass carp. WebSep 30, 2024 · We found evidence for parallel subgenome structure evolution and versatile expression divergence processes in these tetraploids. Resequencing 93 individuals uncovered the geographical genome... em radiation graph

The Promoter SNPs Were Associated with Both the Contents of …

Category:The evolutionary origin and domestication history of goldfish ... - PNAS

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Parallel subgenome common carp

Population analysis of three common carp strains a, Maximum …

WebParallel subgenome structure and divergent expression evolution of allo-tetraploid common carp and goldfish. Nature Genetics 2024-10-30 ... (BMP4) expressions in muscles of tilapia and common carp indicate that BMP4 plays a role in the intermuscular bone distribution in a dose-dependent manner. Gene Expression Patterns 2024 Journal article WebDec 29, 2024 · Common carp ( Cyprinus carpio ) is an allotetraploid Cyprinid species derived from recent whole genome duplication and provides an excellent model system for studying polyploid genome evolution in vertebrates. To explore the origins and consequences of tetraploidy in C. carpio , we generated three chromosome-level new …

Parallel subgenome common carp

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WebOct 1, 2024 · Parallel subgenome structure evolution in the allo-tetraploids was featured with equivalent chromosome components, higher protein identities, similar transposon …

WebSix pSNPs associated with the contents of PUFAs in common carp were identified, including one elovl5a pSNP, one elvl5b p SNP, and four fads2b pSNPS, which were predicted in the locations of transcriptional factor binding sites. The allo-tetraploid common carp encodes two duplicated fads2 genes (fads2a and fads2b) and two duplicated elovl5 … WebOct 11, 2024 · Common carp (Cyprinus carpio) is an allotetraploid species derived from recent whole genome duplication and provides a model to study polyploid genome evolution in vertebrates.Here, we generate three chromosome-level reference genomes of C. carpio and compare to related diploid Cyprinid genomes. We identify a Barbinae lineage as …

WebSep 21, 2014 · This study on the C. carpio genome provides a valuable resource for the molecular-guided breeding and genetic improvement of the common carp. Results … WebParallel subgenome structure and divergent expression evolution of allo-tetraploid common carp and goldfish Published in: Nature Genetics, September 2024 DOI: 10.1038/s41588-021-00933-9: Authors:

WebThe common carp, P. guichenoti and P. tetrazona genomes con - tained 47,924, 24,284 and 21,943 protein-coding genes, respectively. Among them, at least 90.1% and 99.3% …

WebParallel subgenome structure evolution in the allo-tetraploids was featured with equivalent chromosome components, higher protein identities, similar transposon divergence and contents, homoeologous exchanges, better synteny level, strong sequence compensation and symmetric purifying selection. ... Parallel subgenome structure and divergent ... emr airwayWebOct 11, 2024 · Common carp (Cyprinus carpio) is an allotetraploid species derived from recent whole genome duplication and provides a model to study polyploid genome … dr ayisha livingstone floridaWebSep 30, 2024 · In the present study, we report an improved genome assembly of allo-tetraploid common carp, an updated genome annotation of allo-tetraploid goldfish and … emr advanced recycling llc